Sarcomastigophora
Mastigophora
Zoomastigophora
Kinetoplastida
Trypanosomatidae
*Leishmania donovani
*Leishmania tropica
*Leishmania major
*Trypanosoma cruzi
*Trypanosoma gambiense
*Trypanosoma rhodesiense

Retortamonadida
Retortamonadidae
Chilomastix mesnili

Diplomonadida
Hexamitidae
Giardia lamblia

Trichomonadida

Trichomonadidae
Trichomonas vaginalis

Sarcodina
Rhizopoda
Lobosea
Amoebida  

Entamoebidae
Endolimax nana
Entamoeba coli
Entamoeba histolytica
Iodamoeba bütschlii

Acanthamoebidae
*Acanthamoeba astronyxis
*Acanthamoeba castellani
*Acanthamoeba culbertsoni  

Schizopyrenida
Vahlkampfiidae
*Naegleria fowleri